title: "Meta-analysis of genes"
subtitle: "Draft, 25-05-2025v6c"
output:
html_document:
toc: true
toc_float:
collapsed: false
smooth_scroll: false
code_folding: hide
number_sections: false
theme: spacelab
---
# MA_HC_Oligodendrocitos_M {- .tabset .tabset-fade .tabset-pills}
```r
library(dplyr)
library(knitr)
library(DT)
load("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/MA_HC_Oligodendrocitos_M.RData")
```ENSG00000015592
Statistics of ENSG00000015592 meta-analisys
kable(sig.genes.df['ENSG00000015592',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000015592 | STMN4 | 0.5964704 | 0.6471864 | 0.6979024 | 0 | 0.4141429 | 0.8129616 | 0.025876 | 0 | 0 | 1 | 0 | 0 | 133.1887 | 3 | 3 | GSE163577 | 0.4375644 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000015592_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000015592_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000015592_INFLUENCE.png")
ENSG00000064652
Statistics of ENSG00000064652 meta-analisys
kable(sig.genes.df['ENSG00000064652',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000064652 | SNX24 | 0.1556711 | 0.2050607 | 0.2544504 | 0 | 1.786869 | 0.4092477 | 0.0251993 | 0 | 0 | 1 | 0 | 0 | 12.15184 | 3 | 3 | Study43,GSE163577 | 0.2098984 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000064652_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000064652_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000064652_INFLUENCE.png")
ENSG00000116574
Statistics of ENSG00000116574 meta-analisys
kable(sig.genes.df['ENSG00000116574',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000116574 | RHOU | -0.6278487 | -0.497953 | -0.3680574 | 0 | 0.017081 | 0.8960172 | 0.0662745 | 0 | 0 | 1 | 0 | 0 | 10.09417 | 2 | 2 | non | 0.5394091 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000116574_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000116574_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000116574_INFLUENCE.png")
ENSG00000133216
Statistics of ENSG00000133216 meta-analisys
kable(sig.genes.df['ENSG00000133216',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000133216 | EPHB2 | 0.1019956 | 0.1430057 | 0.1840159 | 0 | 1.802694 | 0.4060224 | 0.020924 | 0 | 0 | 1 | 0 | 1e-07 | 8.240188 | 3 | 2 | Study43,GSE163577 | 0.2102482 | Study43,GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000133216_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000133216_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000133216_INFLUENCE.png")
ENSG00000135905
Statistics of ENSG00000135905 meta-analisys
kable(sig.genes.df['ENSG00000135905',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000135905 | DOCK10 | 0.2223648 | 0.3044716 | 0.3865785 | 0 | 0.6221406 | 0.7326624 | 0.041892 | 0 | 0 | 1 | 0 | 0 | 9.46837 | 3 | 3 | non | 0.5636641 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000135905_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000135905_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000135905_INFLUENCE.png")
ENSG00000138756
Statistics of ENSG00000138756 meta-analisys
kable(sig.genes.df['ENSG00000138756',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000138756 | BMP2K | 0.1791992 | 0.2432177 | 0.3072361 | 0 | 1.334383 | 0.5131478 | 0.0326631 | 0 | 0 | 1 | 0 | 0 | 9.951165 | 3 | 3 | GSE163577 | 0.4439739 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000138756_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000138756_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000138756_INFLUENCE.png")
ENSG00000139132
Statistics of ENSG00000139132 meta-analisys
kable(sig.genes.df['ENSG00000139132',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000139132 | FGD4 | 0.2640887 | 0.3576887 | 0.4512888 | 0 | 0.4031037 | 0.8174612 | 0.047756 | 0 | 0 | 1 | 0 | 0 | 10.05746 | 3 | 3 | non | 0.6613331 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000139132_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000139132_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000139132_INFLUENCE.png")
ENSG00000140945
Statistics of ENSG00000140945 meta-analisys
kable(sig.genes.df['ENSG00000140945',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000140945 | CDH13 | -0.5336168 | -0.4425172 | -0.3514177 | 0 | 1.632387 | 0.4421113 | 0.0464802 | 0 | 0 | 1 | 0 | 0 | 17.22023 | 3 | 3 | non | 0.511057 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000140945_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000140945_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000140945_INFLUENCE.png")
ENSG00000151718
Statistics of ENSG00000151718 meta-analisys
kable(sig.genes.df['ENSG00000151718',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000151718 | WWC2 | 0.1556911 | 0.2157718 | 0.2758525 | 0 | 1.450675 | 0.4841611 | 0.030654 | 0 | 0 | 1 | 0 | 0 | 8.771376 | 3 | 3 | GSE163577 | 0.4600804 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000151718_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000151718_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000151718_INFLUENCE.png")
ENSG00000165443
Statistics of ENSG00000165443 meta-analisys
kable(sig.genes.df['ENSG00000165443',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000165443 | PHYHIPL | -1.247842 | -1.059269 | -0.8706958 | 0 | 0.7114509 | 0.7006649 | 0.0962125 | 0 | 0 | 1 | 0 | 0 | 23.61985 | 3 | 3 | GSE163577 | 0.8190228 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000165443_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000165443_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000165443_INFLUENCE.png")
ENSG00000166710
Statistics of ENSG00000166710 meta-analisys
kable(sig.genes.df['ENSG00000166710',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000166710 | B2M | -0.3260474 | -0.2544167 | -0.1827859 | 0 | 0.2794532 | 0.5970598 | 0.036547 | 0 | 0 | 1 | 0 | 0 | 8.557175 | 2 | 2 | GSE163577 | 0.5115676 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000166710_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000166710_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000166710_INFLUENCE.png")
ENSG00000179134
Statistics of ENSG00000179134 meta-analisys
kable(sig.genes.df['ENSG00000179134',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000179134 | SAMD4B | -0.5809829 | -0.4635659 | -0.3461489 | 0 | 0.2354337 | 0.8889477 | 0.0599077 | 0 | 0 | 1 | 0 | 0 | 10.80431 | 3 | 3 | GSE163577 | 0.5332986 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000179134_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000179134_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000179134_INFLUENCE.png")
ENSG00000196335
Statistics of ENSG00000196335 meta-analisys
kable(sig.genes.df['ENSG00000196335',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000196335 | STK31 | -0.1751019 | -0.1362745 | -0.0974472 | 0 | 1.188753 | 0.5519067 | 0.0198102 | 0 | 0 | 1 | 0 | 0 | 8.352973 | 3 | 3 | GSE163577 | 0.6408492 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000196335_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000196335_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000196335_INFLUENCE.png")
ENSG00000198756
Statistics of ENSG00000198756 meta-analisys
kable(sig.genes.df['ENSG00000198756',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000198756 | COLGALT2 | 0.5037355 | 0.6379283 | 0.772121 | 0 | 1.760983 | 0.4145791 | 0.0684669 | 0 | 0 | 1 | 0 | 0 | 16.47663 | 3 | 3 | GSE163577 | 0.3930169 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000198756_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000198756_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000198756_INFLUENCE.png")
ENSG00000206077
Statistics of ENSG00000206077 meta-analisys
kable(sig.genes.df['ENSG00000206077',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000206077 | ZDHHC11B | -0.6389494 | -0.5053263 | -0.3717032 | 0 | 0.8317015 | 0.6597787 | 0.0681763 | 0 | 0 | 1 | 0 | 0 | 9.873629 | 3 | 3 | GSE163577 | 0.615652 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000206077_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000206077_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000206077_INFLUENCE.png")
ENSG00000218336
Statistics of ENSG00000218336 meta-analisys
kable(sig.genes.df['ENSG00000218336',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000218336 | TENM3 | -0.7911362 | -0.6496658 | -0.5081954 | 0 | 3.378428 | 0.1846646 | 0.0721801 | 0.0064685 | 40.80087 | 1.689214 | 0 | 0 | 15.28141 | 3 | 3 | Study43,GSE163577 | 0.8797391 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000218336_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000218336_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000218336_INFLUENCE.png")
ENSG00000235831
Statistics of ENSG00000235831 meta-analisys
kable(sig.genes.df['ENSG00000235831',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000235831 | BHLHE40-AS1 | -0.2334301 | -0.1842669 | -0.1351038 | 0 | 0.007542 | 0.9307951 | 0.0250837 | 0 | 0 | 1 | 0 | 0 | 9.690639 | 2 | 2 | non | 0.6018147 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000235831_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000235831_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000235831_INFLUENCE.png")
ENSG00000249378
Statistics of ENSG00000249378 meta-analisys
kable(sig.genes.df['ENSG00000249378',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000249378 | LINC01060 | 0.0708068 | 0.0924088 | 0.1140109 | 0 | 0.1235569 | 0.7252083 | 0.0110217 | 0 | 0 | 1 | 0 | 0 | 12.9916 | 2 | 2 | GSE163577 | 0.5264385 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000249378_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000249378_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000249378_INFLUENCE.png")
ENSG00000251562
Statistics of ENSG00000251562 meta-analisys
kable(sig.genes.df['ENSG00000251562',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000251562 | MALAT1 | 0.4464196 | 0.548796 | 0.6511724 | 0 | 22.11111 | 1.58e-05 | 0.0522338 | 0.0074036 | 90.95477 | 11.05555 | 0 | 0 | 21.42511 | 3 | 3 | Study43,GSE163577 | 0.9861752 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000251562_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000251562_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000251562_INFLUENCE.png")
ENSG00000264364
Statistics of ENSG00000264364 meta-analisys
kable(sig.genes.df['ENSG00000264364',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000264364 | DYNLL2 | 0.2052883 | 0.2868884 | 0.3684886 | 0 | 1.965835 | 0.3742178 | 0.0416335 | 0 | 0 | 1 | 0 | 0 | 8.365538 | 3 | 3 | non | 0.4181609 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000264364_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000264364_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/M/plots/ENSG00000264364_INFLUENCE.png")
sessionInfo
date()## [1] "Sun May 25 15:53:35 2025"sessionInfo()## R version 4.2.2 (2022-10-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
##
## Matrix products: default
## BLAS/LAPACK: /opt/sci-soft/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64/libflexiblas.so.3.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] plotly_4.10.4 DT_0.26 knitr_1.41 ggplot2_3.5.2 dplyr_1.0.10 limma_3.54.0
## [7] tibble_3.1.8 metafor_3.8-1 metadat_1.2-0 Matrix_1.5-3 Biobase_2.58.0 BiocGenerics_0.44.0
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.0 xfun_0.35 bslib_0.4.2 purrr_0.3.5 lattice_0.20-45 vctrs_0.6.5
## [7] generics_0.1.3 htmltools_0.5.4 viridisLite_0.4.1 yaml_2.3.6 utf8_1.2.2 rlang_1.1.6
## [13] pillar_1.8.1 jquerylib_0.1.4 glue_1.6.2 withr_2.5.0 DBI_1.1.3 RColorBrewer_1.1-3
## [19] lifecycle_1.0.3 stringr_1.5.0 gtable_0.3.1 htmlwidgets_1.6.0 evaluate_0.19 labeling_0.4.2
## [25] fastmap_1.1.0 crosstalk_1.2.0 fansi_1.0.3 highr_0.9 scales_1.4.0 cachem_1.0.6
## [31] jsonlite_1.8.4 farver_2.1.1 png_0.1-8 digest_0.6.31 stringi_1.7.8 grid_4.2.2
## [37] mathjaxr_1.6-0 cli_3.4.1 tools_4.2.2 magrittr_2.0.3 sass_0.4.4 lazyeval_0.2.2
## [43] dichromat_2.0-0.1 tidyr_1.2.1 pkgconfig_2.0.3 ellipsis_0.3.2 data.table_1.14.6 assertthat_0.2.1
## [49] rmarkdown_2.19 httr_1.4.4 rstudioapi_0.14 R6_2.5.1 nlme_3.1-161 compiler_4.2.2